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Continuing on my commitment to share small but interesting things in Google Cloud, this time I created a model for a With the help of numerous algorithms in AI, modern COVID-19 cases can be detected and managed in a classified framework. A survey on deep learning in medical image analysis. 2020-09-21 . Deep Learning Based Image Classification of Lungs Radiography for Detecting COVID-19 using a Deep CNN and ResNet 50 Table2 shows some samples from two datasets. Automatic COVID-19 lung images classification system based on convolution neural network. PVT-COV19D: COVID-19 Detection Through Medical Image Classification Based on Pyramid Vision Transformer. This paper reviews the recent progress of deep learning in COVID-19 images applications from five aspects; Firstly, 33 COVID-19 datasets and data enhancement methods are introduced; Secondly, COVID-19 classification methods . They were manually aggregated from various web based repositories into a machine learning (ML) friendly format with accompanying data loader code. Abadi, M. et al. COVID-19 image classification using deep features and fractional-order marine predators algorithm. Image Anal. Computational image analysis techniques play a vital role in disease treatment and diagnosis. Classification of COVID19 using Chest X-ray Images in Keras 4.6 33 ratings Share Offered By In this Guided Project, you will: Learn to Build and Train the Convolutional Neural Network using Keras with Tensorflow as Backend Learn to Visualize Data in Matplotlib Learn to make use of the Trained Model to Predict on a New Set of Data 2 hours 79, 18839 (2020). Podlubny, I. Detection of lung cancer on chest ct images using minimum redundancy maximum relevance feature selection method with convolutional neural networks. Springer Science and Business Media LLC Online. For general case based on the FC definition, the Eq. Radiology 295, 2223 (2020). Extensive evaluation experiments had been carried out with a collection of two public X-ray images datasets. https://keras.io (2015). The classification accuracy of MPA, WOA, SCA, and SGA are almost the same. Hence, the FC memory is applied during updating the prey locating in the second step of the algorithm to enhance the exploitation stage. The proposed CNN architecture for Task 2 consists of 14 weighted layers, in which there are three convolutional layers and one fully connected layer, as shown in Fig. On January 20, 2023, Japanese Prime Minister Fumio Kishida announced that the country would be downgrading the COVID-19 classification. Our method is able to classify pneumonia from COVID-19 and visualize an abnormal area at the same time. Artif. The memory properties of Fc calculus makes it applicable to the fields that required non-locality and memory effect. 4b, FO-MPA algorithm selected successfully fewer features than other algorithms, as it selected 130 and 86 features from Dataset 1 and Dataset 2, respectively. To further analyze the proposed algorithm, we evaluate the selected features by FO-MPA by performing classification. Use the Previous and Next buttons to navigate the slides or the slide controller buttons at the end to navigate through each slide. Bibliographic details on CECT: Controllable Ensemble CNN and Transformer for COVID-19 image classification by capturing both local and global image features. Lilang Zheng, Jiaxuan Fang, Xiaorun Tang, Hanzhang Li, Jiaxin Fan, Tianyi Wang, Rui Zhou, Zhaoyan Yan: PVT-COV19D: COVID-19 Detection Through Medical Image Classification Based on Pyramid Vision Transformer. The MPA starts with the initialization phase and then passing by other three phases with respect to the rational velocity among the prey and the predator. Shi, H., Li, H., Zhang, D., Cheng, C. & Cao, X. The 30-volume set, comprising the LNCS books 12346 until 12375, constitutes the refereed proceedings of the 16th European Conference on Computer Vision, ECCV 2020, which was planned to be held in Glasgow, UK, during August 23-28, 2020. Google Research, https://research.googleblog.com/2017/11/automl-for-large-scaleimage.html, Blog (2017). Sign up for the Nature Briefing newsletter what matters in science, free to your inbox daily. Therefore, several pre-trained models have won many international image classification competitions such as VGGNet24, Resnet25, Nasnet26, Mobilenet27, Inception28 and Xception29. used VGG16 to classify Covid-19 and achieved good results with an accuracy of 86% [ 22 ]. Etymology. what medical images are commonly used for COVID-19 classification and what are the methods for COVID-19 classification. A properly trained CNN requires a lot of data and CPU/GPU time. Article Robustness-driven feature selection in classification of fibrotic interstitial lung disease patterns in computed tomography using 3d texture features. Cancer 48, 441446 (2012). PubMed Compared to59 which is one of the most recent published works on X-ray COVID-19, a combination between You Only Look Once (YOLO) which is basically a real time object detection system and DarkNet as a classifier was proposed. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 19 (2015). Figure5, shows that FO-MPA shows an efficient and faster convergence than the other optimization algorithms on both datasets. You have a passion for computer science and you are driven to make a difference in the research community? This task is achieved by FO-MPA which randomly generates a set of solutions, each of them represents a subset of potential features. arXiv preprint arXiv:1704.04861 (2017). Mobilenets: Efficient convolutional neural networks for mobile vision applications. Early diagnosis, timely treatment, and proper confinement of the infected patients are some possible ways to control the spreading of . 22, 573577 (2014). The memory terms of the prey are updated at the end of each iteration based on first in first out concept. 35, 1831 (2017). They achieved 98.08 % and 96.51 % of accuracy and F-Score, respectively compared to our approach with 98.77 % and 98.2% for accuracy and F-Score, respectively. To address this challenge, this paper proposes a two-path semi- supervised deep learning model, ssResNet, based on Residual Neural Network (ResNet) for COVID-19 image classification, where two paths refer to a supervised path and an unsupervised path, respectively. Improving the ranking quality of medical image retrieval using a genetic feature selection method. Efficient classification of white blood cell leukemia with improved swarm optimization of deep features. Robertas Damasevicius. Although convolutional neural networks (CNNs) is considered the current state-of-the-art image classification technique, it needs massive computational cost for deployment and training. 11314, 113142S (International Society for Optics and Photonics, 2020). Using the best performing fine-tuned VGG-16 DTL model, tests were carried out on 470 unlabeled image dataset, which was not used in the model training and validation processes. The symbol \(R_B\) refers to Brownian motion. 0.9875 and 0.9961 under binary and multi class classifications respectively. Moreover, we design a weighted supervised loss that assigns higher weight for . kharrat and Mahmoud32proposed an FS method based on a hybrid of Simulated Annealing (SA) and GA to classify brain tumors using MRI. In my thesis project, I developed an image classification model to detect COVID-19 on chest X-ray medical data using deep learning models such . . 78, 2091320933 (2019). The whale optimization algorithm. The authors declare no competing interests. Sci. It is obvious that such a combination between deep features and a feature selection algorithm can be efficient in several image classification tasks. They also used the SVM to classify lung CT images. SharifRazavian, A., Azizpour, H., Sullivan, J. SMA is on the second place, While HGSO, SCA, and HHO came in the third to fifth place, respectively. Netw. These images have been further used for the classification of COVID-19 and non-COVID-19 images using ResNet50 and AlexNet convolutional neural network (CNN) models. Med. In Eq. Correspondence to Comput. How- individual class performance. Marine memory: This is the main feature of the marine predators and it helps in catching the optimal solution very fast and avoid local solutions. Toaar, M., Ergen, B. AMERICAN JOURNAL OF EMERGENCY MEDICINE COVID-19: Facemask use prevalence in international airports in Asia, Europe and the Americas, March 2020 The proposed IMF approach is employed to select only relevant and eliminate unnecessary features. The Weibull Distribution is a heavy-tied distribution which presented as in Fig. Eur. With accounting the first four previous events (\(m=4\)) from the memory data with derivative order \(\delta\), the position of prey can be modified as follow; Second: Adjusting \(R_B\) random parameter based on weibull distribution. Eng. We have used RMSprop optimizer for weight updates, cross entropy loss function and selected learning rate as 0.0001. Scientific Reports Volume 10, Issue 1, Pages - Publisher. & Wang, W. Medical image segmentation using fruit fly optimization and density peaks clustering. For Dataset 2, FO-MPA showed acceptable (not the best) performance, as it achieved slightly similar results to the first and second ranked algorithm (i.e., MPA and SMA) on mean, best, max, and STD measures. The optimum path forest (OPF) classifier was applied to classify pulmonary nodules based on CT images. Based on Standard Deviation measure (STD), the most stable algorithms were SCA, SGA, BPSO, and bGWO, respectively. arXiv preprint arXiv:2003.13145 (2020). In 2018 IEEE International Symposium on Circuits and Systems (ISCAS), 15 (IEEE, 2018). The first one is based on Python, where the deep neural network architecture (Inception) was built and the feature extraction part was performed. So some statistical operations have been added to exclude irrelevant and noisy features, and by making it more computationally efficient and stable, they are summarized as follows: Chi-square is applied to remove the features which have a high correlation values by computing the dependence between them. & SHAH, S. S.H. The diagnostic evaluation of convolutional neural network (cnn) for the assessment of chest x-ray of patients infected with covid-19. Experimental results have shown that the proposed Fuzzy Gabor-CNN algorithm attains highest accuracy, Precision, Recall and F1-score when compared to existing feature extraction and classification techniques. Also, because COVID-19 is a virus, distinguish COVID-19 from common viral . By submitting a comment you agree to abide by our Terms and Community Guidelines. Decis. Article volume10, Articlenumber:15364 (2020) Refresh the page, check Medium 's site status, or find something interesting. and pool layers, three fully connected layers, the last one performs classification. (iii) To implement machine learning classifiers for classification of COVID and non-COVID image classes. arXiv preprint arXiv:2004.07054 (2020). \(r_1\) and \(r_2\) are the random index of the prey. contributed to preparing results and the final figures. Med. (24). arXiv preprint arXiv:1409.1556 (2014). However, the proposed IMF approach achieved the best results among the compared algorithms in least time. After applying this technique, the feature vector is minimized from 2000 to 459 and from 2000 to 462 for Dataset1 and Dataset 2, respectively. COVID 19 X-ray image classification. In Inception, there are different sizes scales convolutions (conv. In ancient India, according to Aelian, it was . They shared some parameters, such as the total number of iterations and the number of agents which were set to 20 and 15, respectively. PubMed Central & Zhu, Y. Kernel feature selection to fuse multi-spectral mri images for brain tumor segmentation. Nevertheless, a common mistake in COVID-19 dataset fusion, mainly on classification tasks, is that by mixing many datasets of COVID-19 and using as Control images another dataset, there will be . Table2 depicts the variation in morphology of the image, lighting, structure, black spaces, shape, and zoom level among the same dataset, as well as with the other dataset. Lambin, P. et al. Imaging 29, 106119 (2009). The family of coronaviruses is considered serious pathogens for people because they infect respiratory, hepatic, gastrointestinal, and neurologic diseases. Our proposed approach is called Inception Fractional-order Marine Predators Algorithm (IFM), where we combine Inception (I) with Fractional-order Marine Predators Algorithm (FO-MPA). They applied the SVM classifier with and without RDFS. arXiv preprint arXiv:2004.05717 (2020). More so, a combination of partial differential equations and deep learning was applied for medical image classification by10. In such a case, in order to get the advantage of the power of CNN and also, transfer learning can be applied to minimize the computational costs21,22. 25, 3340 (2015). Howard, A.G. etal. JMIR Formative Research - Classifying COVID-19 Patients From Chest X-ray Images Using Hybrid Machine Learning Techniques: Development and Evaluation Published on 28.2.2023 in Vol 7 (2023) Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/42324, first published August 31, 2022 . Google Scholar. Generally, the most stable algorithms On dataset 1 are WOA, SCA, HGSO, FO-MPA, and SGA, respectively. Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations. It is also noted that both datasets contain a small number of positive COVID-19 images, and up to our knowledge, there is no other sufficient available published dataset for COVID-19. Syst. arXiv preprint arXiv:1711.05225 (2017). Comput. An efficient feature generation approach based on deep learning and feature selection techniques for traffic classification. Tensorflow: Large-scale machine learning on heterogeneous systems, 2015. 51, 810820 (2011). (8) can be remodeled as below: where \(D^1[x(t)]\) represents the difference between the two followed events. CAS The following stage was to apply Delta variants. According to the formula10, the initial locations of the prey and predator can be defined as below: where the Elite matrix refers to the fittest predators. Number of extracted feature and classification accuracy by FO-MPA compared to other CNNs on dataset 1 (left) and on dataset 2 (right). (8) at \(T = 1\), the expression of Eq. They are distributed among people, bats, mice, birds, livestock, and other animals1,2. Table3 shows the numerical results of the feature selection phase for both datasets. . Havaei, M. et al. Accordingly, the FC is an efficient tool for enhancing the performance of the meta-heuristic algorithms by considering the memory perspective during updating the solutions. and M.A.A.A. Accordingly, that reflects on efficient usage of memory, and less resource consumption. In this subsection, a comparison with relevant works is discussed. Covid-19 Classification Using Deep Learning in Chest X-Ray Images Abstract: Covid-19 virus, which has emerged in the Republic of China in an undetermined cause, has affected the whole world quickly. Furthermore, deep learning using CNN is considered one of the best choices in medical imaging applications20, especially classification. Contribute to hellorp1990/Covid-19-USF development by creating an account on GitHub. Abbas, A., Abdelsamea, M.M. & Gaber, M.M. Classification of covid-19 in chest x-ray images using detrac deep convolutional neural network. COVID-19 Chest X -Ray Image Classification with Neural Network Currently we are suffering from COVID-19, and the situation is very serious. The proposed IFM approach is summarized as follows: Extracting deep features from Inception, where about 51 K features were extracted. However, the modern name is tenggiling.In Javanese it is terenggiling; and in the Philippine languages, it is goling, tanggiling, or balintong (with the same meaning).. Covid-19 dataset. 42, 6088 (2017). In the meantime, to ensure continued support, we are displaying the site without styles (1): where \(O_k\) and \(E_k\) refer to the actual and the expected feature value, respectively. Google Scholar. Therefore, in this paper, we propose a hybrid classification approach of COVID-19. To obtain MathSciNet The main purpose of Conv. HIGHLIGHTS who: Qinghua Xie and colleagues from the Te Afliated Changsha Central Hospital, Hengyang Medical School, University of South China, Changsha, Hunan, China have published the Article: Automatic Segmentation and Classification for Antinuclear Antibody Images Based on Deep Learning, in the Journal: Computational Intelligence and Neuroscience of 14/08/2022 what: Terefore, the authors . Comput. J. Med. We build the first Classification model using VGG16 Transfer leaning framework and second model using Deep Learning Technique Convolutional Neural Network CNN to classify and diagnose the disease and we able to achieve the best accuracy in both the model. In our example the possible classifications are covid, normal and pneumonia. Imag. Google Scholar. & Baby, C.J. Emphysema medical image classification using fuzzy decision tree with fuzzy particle swarm optimization clustering. Google Scholar. In14, the authors proposed an FS method based on a convolutional neural network (CNN) to detect pneumonia from lung X-ray images. On the second dataset, dataset 2 (Fig. \(\Gamma (t)\) indicates gamma function. The results are the best achieved compared to other CNN architectures and all published works in the same datasets. Chong, D. Y. et al. Internet Explorer). As Inception examines all X-ray images over and over again in each epoch during the training, these rapid ups and downs are slowly minimized in the later part of the training. The results are the best achieved on these datasets when compared to a set of recent feature selection algorithms. The evaluation confirmed that FPA based FS enhanced classification accuracy. Use of chest ct in combination with negative rt-pcr assay for the 2019 novel coronavirus but high clinical suspicion. Ozturk et al. Metric learning Metric learning can create a space in which image features within the. Afzali, A., Mofrad, F.B. Performance analysis of neural networks for classification of medical images with wavelets as a feature extractor. Moreover, the \(R_B\) parameter has been changed to depend on weibull distribution as described below. 517 PDF Ensemble of Patches for COVID-19 X-Ray Image Classification Thiago Chen, G. Oliveira, Z. Dias Medicine HIGHLIGHTS who: Yuan Jian and Qin Xiao from the Fukuoka University, Japan have published the Article: Research and Application of Fine-Grained Image Classification Based on Small Collar Dataset, in the Journal: (JOURNAL) what: MC-Loss drills down on the channels to effectively navigate the model, focusing on different distinguishing regions and highlighting diverse features. and A.A.E. However, the proposed FO-MPA approach has an advantage in performance compared to other works. ADS Also, in58 a new CNN architecture called EfficientNet was proposed, where more blocks were added on top of the model after applying normalization of images pixels intensity to the range (0 to 1). It can be concluded that FS methods have proven their advantages in different medical imaging applications19. Heidari, A. As seen in Table3, on Dataset 1, the FO-MPA outperformed the other algorithms in the mean of fitness value as it achieved the smallest average fitness function value followed by SMA, HHO, HGSO, SCA, BGWO, MPA, and BPSO, respectively whereas, the SGA and WOA showed the worst results. This study aims to improve the COVID-19 X-ray image classification using feature selection technique by the regression mutual information deep convolution neuron networks (RMI Deep-CNNs). Knowl. where \(fi_{i}\) represents the importance of feature I, while \(ni_{j}\) refers to the importance of node j. }\delta (1-\delta )(2-\delta )(3-\delta ) U_{i}(t-3) + P.R\bigotimes S_i. https://doi.org/10.1016/j.future.2020.03.055 (2020). Inf. ), such as \(5\times 5\), \(3 \times 3\), \(1 \times 1\). A deep feature learning model for pneumonia detection applying a combination of mRMR feature selection and machine learning models. Background The large volume and suboptimal image quality of portable chest X-rays (CXRs) as a result of the COVID-19 pandemic could post significant challenges for radiologists and frontline physicians. The second one is based on Matlab, where the feature selection part (FO-MPA algorithm) was performed. Lilang Zheng, Jiaxuan Fang, Xiaorun Tang, Hanzhang Li, Jiaxin Fan, Tianyi Wang, Rui Zhou, Zhaoyan Yan. (22) can be written as follows: By using the discrete form of GL definition of Eq. The parameters of each algorithm are set according to the default values. Besides, the binary classification between two classes of COVID-19 and normal chest X-ray is proposed. For example, as our input image has the shape \(224 \times 224 \times 3\), Nasnet26 produces 487 K features, Resnet25 and Xception29 produce about 100 K features and Mobilenet27 produces 50 K features, while FO-MPA produces 130 and 86 features for both dataset1 and dataset 2, respectively. HGSO was ranked second with 146 and 87 selected features from Dataset 1 and Dataset 2, respectively. Extensive comparisons had been implemented to compare the FO-MPA with several feature selection algorithms, including SMA, HHO, HGSO, WOA, SCA, bGWO, SGA, BPSO, besides the classic MPA. Our results indicate that the VGG16 method outperforms . Health Inf. Also, WOA algorithm showed good results in all measures, unlike dataset 1, which can conclude that no algorithm can solve all kinds of problems. Yousri, D. & Mirjalili, S. Fractional-order cuckoo search algorithm for parameter identification of the fractional-order chaotic, chaotic with noise and hyper-chaotic financial systems. E. B., Traina-Jr, C. & Traina, A. J. The focus of this study is to evaluate and examine a set of deep learning transfer learning techniques applied to chest radiograph images for the classification of COVID-19, normal (healthy), and pneumonia. Accordingly, the prey position is upgraded based the following equations. In addition, up to our knowledge, MPA has not applied to any real applications yet. The largest features were selected by SMA and SGA, respectively. Coronavirus Disease (COVID-19): A primer for emergency physicians (2020) Summer Chavez et al. Arijit Dey, Soham Chattopadhyay, Ram Sarkar, Dandi Yang, Cristhian Martinez, Jesus Carretero, Jess Alejandro Alzate-Grisales, Alejandro Mora-Rubio, Reinel Tabares-Soto, Lo Dumortier, Florent Gupin, Thomas Grenier, Linda Wang, Zhong Qiu Lin & Alexander Wong, Afnan Al-ali, Omar Elharrouss, Somaya Al-Maaddeed, Robbie Sadre, Baskaran Sundaram, Daniela Ushizima, Zahid Ullah, Muhammad Usman, Jeonghwan Gwak, Scientific Reports Image Anal. Deep-learning artificial intelligent (AI) methods have the potential to help improve diagnostic efficiency and accuracy for reading portable CXRs. Med. Inspired by this concept, Faramarzi et al.37 developed the MPA algorithm by considering both of a predator a prey as solutions. Get the most important science stories of the day, free in your inbox. CAS chest X-ray images into three classes of COVID-19, normal chest X-ray and other lung diseases. While the second dataset, dataset 2 was collected by a team of researchers from Qatar University in Qatar and the University of Dhaka in Bangladesh along with collaborators from Pakistan and Malaysia medical doctors44. The MCA-based model is used to process decomposed images for further classification with efficient storage. Feature selection based on gaussian mixture model clustering for the classification of pulmonary nodules based on computed tomography. In9, to classify ultrasound medical images, the authors used distance-based FS methods and a Fuzzy Support Vector Machine (FSVM). Remainder sections are organized as follows: Material and methods sectionpresents the methodology and the techniques used in this work including model structure and description. The Softmax activation function is used for this purpose because the output should be binary (positive COVID-19 negative COVID-19). They were also collected frontal and lateral view imagery and metadata such as the time since first symptoms, intensive care unit (ICU) status, survival status, intubation status, or hospital location. arXiv preprint arXiv:2003.11597 (2020). Memory FC prospective concept (left) and weibull distribution (right). 111, 300323. The evaluation showed that the RDFS improved SVM robustness against reconstruction kernel and slice thickness. Kong, Y., Deng, Y. Image Classification With ResNet50 Convolution Neural Network (CNN) on Covid-19 Radiography | by Emmanuella Anggi | The Startup | Medium 500 Apologies, but something went wrong on our end.. Also, As seen in Fig. ADS Moreover, from Table4, it can be seen that the proposed FO-MPA provides better results in terms of F-Score, as it has the highest value in datatset1 and datatset2 which are 0.9821 and 0.99079, respectively. The dataset consists of 21,165 chest X-ray (CXR) COVID-19 images distributed on four categories which are COVID19, lung opacity, viral pneumonia, and NORMAL (Non-COVID). One of the main disadvantages of our approach is that its built basically within two different environments. (5). It also shows that FO-MPA can select the smallest subset of features, which reflects positively on performance. Wish you all a very happy new year ! Appl. MATH 97, 849872 (2019). Biomed. However, some of the extracted features by CNN might not be sufficient, which may affect negatively the quality of the classification images. Article It noted that all produced feature vectors by CNNs used in this paper are at least bigger by more than 300 times compared to that produced by FO-MPA in terms of the size of the featureset. Luz, E., Silva, P.L., Silva, R. & Moreira, G. Towards an efficient deep learning model for covid-19 patterns detection in x-ray images. Table4 show classification accuracy of FO-MPA compared to other feature selection algorithms, where the best, mean, and STD for classification accuracy were calculated for each one, besides time consumption and the number of selected features (SF). \delta U_{i}(t)+ \frac{1}{2! Radiomics: extracting more information from medical images using advanced feature analysis. For instance,\(1\times 1\) conv. Med. Alhamdulillah, glad to share that our paper entitled "Multi-class classification of brain tumor types from MR Images using EfficientNets" has been accepted for This means we can use pre-trained model weights, leveraging all of the time and data it took for training the convolutional part, and just remove the FCN layer. Recombinant: A process in which the genomes of two SARS-CoV-2 variants (that have infected a person at the same time) combine during the viral replication process to form a new variant that is different . For the special case of \(\delta = 1\), the definition of Eq. All classication models ever, the virus mutates, and new variants emerge and dis- performed better in classifying the Non-COVID-19 images appear. M.A.E. 10, 10331039 (2020). As seen in Table1, we keep the last concatenation layer which contains the extracted features, so we removed the top layers such as the Flatten, Drop out and the Dense layers which the later performs classification (named as FC layer). Blog, G. Automl for large scale image classification and object detection. implemented the FO-MPA swarm optimization and prepared the related figures and manuscript text. & Cao, J. In Medical Imaging 2020: Computer-Aided Diagnosis, vol. A.T.S. 2. Test the proposed Inception Fractional-order Marine Predators Algorithm (IFM) approach on two publicity available datasets contain a number of positive negative chest X-ray scan images of COVID-19. In general, feature selection (FS) methods are widely employed in various applications of medical imaging applications. In this experiment, the selected features by FO-MPA were classified using KNN. For example, Lambin et al.7 proposed an efficient approach called Radiomics to extract medical image features. Li, S., Chen, H., Wang, M., Heidari, A. 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